BtaEX0012093 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3515066-3525071:+
Coord C1 exon
chr23:3515066-3515164
Coord A exon
chr23:3518591-3521161
Coord C2 exon
chr23:3524943-3525071
Length
2571 bp
Sequences
Splice sites
3' ss Seq
CTTCTGAACGTCTCTCGTAGATG
3' ss Score
7.07
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
TTCATGGACCTGAGGACCCGATACACGGCTCTGGTCACCCTCATGACACAATATATTAAATTTGCTGGGGACTCATTGAAGAGACTGGAGGAGGAGGAG
Seq A exon
ATGCAGAGGCGTCAGGAGGCTTCAGAGCAAGGGGTGTACTCAGACCTGCTCCAGCGGCAGGAGGCGACCGTGCGGGAGAACCGCCAGCTCGCGGGGAAGATCACAGAGCTGGAGAAGGTGCTGGCCGAGCTCGAGAGGCAGAAGTCCCGGGCGGAGCAGGAGCTCCCCAGAGTCCGGGAGGAGGCGGAGGACGCGCTGAGGAGGCAGCGCAGGGACGCGGCGGACATCGCGCTGCAGAAAGTGCGCGCGGAGAGCGAGGCCCAGCGGTACCGTCGGGAGCTGCAGGCGGTGGAGCGCGACCTGCGCGGCTTCCGGGAGCAGCTGGCGGAGCACAGCGCTGCCCAGAGGGCGCTGGAGGAGCGCCTGACCAGGAAGGACTGCAGCCTCCAGGAGCTCGAGCGGCAGAGGGGCGAGCTCATGGCGGAGCTGAGGAGGAAGAAGGCCCACGAAGCCGAACTCCTGGAGCTGATGGAACGGATGGAGAAAGACCTCACGTTCCGGAAGCAGGCGGCAGAGAAGCAGCTGGAGGGAAAGCAGAAAATCGACTCAGAAGCCCGAAGAACAGTAACAGAAATGCAGCATCCGTGCAGAGAAAGCGCGCACCCAGCTTGTCCGAATGCCGAGGCGAAGGACCTGAAGGAGCAGGTGGATGAGCTGATGGCGGCCAACAGGAGGGCCGAGCAGGACGTGAGGAAGCTGAAGTGTGAACTCGGCGCCCTGCAGCTCGAAAAAACCTCCTCGGAGGAGAAGGCCCGCTTGCTCAAAGAGAAACTGGATGAGACCAACAAGTCCCTGAGGTGCCTGAAGCTGGAACTGGAAAGGAAGGACCAGGCCGAGGAGGGGTACTCGCGGCAGCTCCAGGAGCTGGGCAGGCAGCTGAGCCAGACCACGGGGAGGGCTGCGGAGGTCAGGCAGGAGGCTGCCGACCTCACGAGGATGAAGCACAGCTATGAGCTGGAACTGGAGTCGCTGCAGCAGGAGCGGGGCAAGCTCCAGAGGGAGGGGGACCGGATCAGCAGGACGCAGGCTGCCGCCGAGAGGAGCATGCAGCATCTAAACTCACAGGTTACTTCTCCACAGGATAGCAAGGTGTCCTCTAGAGAAAGAGCATGGTCCTGCCAGAGAACGTCAGATAACCTGAAAGAGCAGTTTGAGAAAAGTCACGCACAGTTGCTTCAGAATATTCAAGCCGAAAAGGAGAATAACGAGAAAATCCAAAAGCTGAAAGAGGAATTGGAGAGAAGTAATGAGCGTGCAGACAAGCTTAGGCACAAGGTGGAGGAGCTCACCAGGCAGAATAACCAAACCAAGTTAACAATGCAGAGAATTCAGGCAGAATCGGCAGACGTGGTCTTAGAGAAACAAGCCATCCAGCAAAGATGTGAAACACTGAAACTCCAGGCGGATGGTTTCAAAGACCAGCTTCGCACCACCACCGAGCACTTGCACAAACAGACCAAAACGGAACAGGATTTCCAAAGGAGAATCAAATGCCTGGAAGAAGACCTGGCCCAGAGTCAGCATTTAGTGAGTGAATTCAAGCAGAAGTGTGACCAGCAAGACCGCATCATCCAGAACACAGAGAAGGAGGTGCGGAGTCTGAGCGCGGAGCTGAGCGCATCGAAAGAGGAGAAGCGCCTTGGGGAGCAGACGGTGCAGAGGCAGCGGGCGCAGGTGCAGGACCTGAACAACAGGCTGAAGAAGGTGCAAGACGAACTGCACTTAAAGACCCTAGAGGAGCAGGTGACCCACAGGAAGATGGTTCTGTTTCAGGAAGAGTCTGAGAAATTTAAGCGCTCTGCAGAGGAGTTTCGGAAGAAGATGGAAAAATTGATGGACTCCAAAGATATTACAGAACGTGATATTTCGGGCATCCAGCTGGACTTCGTGTCTCTGCAGCGGGAAAACAGCAGGGCTCAAGAGAATGCCAGGCTCTGTGAGACAAACATCCAAGAACTTGAGAAGCAGCTCCAGCAGTATCGCCAGCAGATGCACCAAGGGCAGGATGGGCAGGCCCATCACTATCAGAAGTGTCGGAAGCTGGAGGAAGAGCTGGTGGCCCAGAAGCGGGAGGTGGAAAACCTGAAGCAGAAGATGGACCAGCAGATAAAGGAGCACGAGCATCAGTTAGTGGTGCTCCAGGGTGAAATCCAGAAAAAGAACACAGCCATCAAGCCAGACCCTGAGATGGCAGGGAAAGAGGGTCCGGGCCCCAGGGACCTCCCCTCCACTCCCCCCGTGTCTGGGGTCCCTCTGCAGAGGTGGACTCAGGAACCACAGCCCTCGGAGGAAAGATGGCAGCGTTGGGGTGCAGAGAATGTACAGAAGGAGGTCCAGGGCAGGCCATCAGGGGCTCCAGTTGAGAAAGAGAAAATCCAGCAGTGCTACTCGGAGTACTTTTCTCAAACAAGCACCGAGTTACAGATAACTTTTGATGAGACGAACCCCATTGCAAGACTGTCAGAAATTGAGAAGCTAAGAGATCAAGCTCTGTGTAATTCCAGACCCGCCATCAGGTGTCAAGATGACAAGTATGAAATAGACCTGGTGACGCTTCTGGCGCCCTTCGAG
Seq C2 exon
AAGTCACTGGAAGAAGAAAAGAAAGAGCATGTTGAAAAAGTCAAAGAATTACAAAAATGGGTATCAAATATCAGCAAGACATTGAGAGATGGAGAGAAGGCTGGAAAGTCTTCCTTTTCTAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.593 C2=0.262
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061451fB2283
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development