GgaEX1021120 @ galGal4
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86420003-86430843:+
Coord C1 exon
chr3:86420003-86420101
Coord A exon
chr3:86424108-86426876
Coord C2 exon
chr3:86430709-86430843
Length
2769 bp
Sequences
Splice sites
3' ss Seq
CTTAGTTTATTTTTCTACAGATT
3' ss Score
7.85
5' ss Seq
GAGGTATAC
5' ss Score
6.64
Exon sequences
Seq C1 exon
TTCATGGATTTACGAACTCGTTATACTGCCTTAGTGACTTTGATGACACAGTACATCAAGTTTGCAGGTGACTCTCTGAAAAGGCTGGAGGAGGAAGAG
Seq A exon
ATTTTAAGGAATAAGGAGGCATCAGTGCGTGAGGCATATTCAGATCTAATGGCACAAAAAAATAGCACAACTGATGAGAACAGAAAACTCATGGGAAAGGTAAAAGCACTTGAGGAGATGCTGGAGAACGTGAAGAAACAAAAAATCCAAGTGGAACAGGAGCTCCCTAAACTGAGGGAAGCTGCGGAAAATGAACGGAAGAAGCAGCAAAAGGATATGGAAGAGATCTGTCTTCAAAAGACCAAGGCTGAGCAAGAAGCAAAACAGTATCGTATGGATCTAGAGAACGTTGAAAAAGAGAAAGCAGATGCAAAGCAGGAGTTGGAGTGTGTAAGGCAGCTCATTTTTCAGGCTGAGACACAGAGAAGCATACTGGAAGAAAACCTCCGAGCTTTTCGAAATCAAATAGAAGAAAGCACCTTTACCAGAAGAAACCTTGAAGACCATCTAAGAAGAAAAGATACTAATCTTCATGATTTAGAGCAGCAAAAAAAAACCCTCATGCAGGAGCTAAAGAAAAAAACAGAAGGAGAAGAGAAACTTATGAAACTGATAAAGCAAATGGAGCAAGATCTTGAGGTTAAAGGGAATCTATCCGAAATAAAGTTGCAAGAAAAAGAAAAGACTGAAACCAGAAGGAAAGTTGTTGAAGGCAGATACACTGTGACTAGAGAAACTTCCCTGCCAACTTGCACAGCTGGGCAAGGCAGCCAGTGTAGGATAGATTCTGAAATTACAAGTTTCCAGAGGAAACAAGAAGCAAAAAAAGTAGAAGAGCTTAAGCAGAAGGTGGATGAGCTTATCCTTGCTAACAAAAAAGCTGATAAAACCATTAAAGACCTCAAATATGAACTAAATGAAATTGAGCTTCAGAAATCATCAACAGAAGAAAAGTCTCGTTTATTAAAAGAAAAATTAGATGAAGCCAACAGTGAACTTAAATGCCTAAAAATCAAACTGGAGGAAAAAGACCAAGTAGAGCAGAGCTATCTGCAACAGTTAAAAGAACTTGACAAGCAACTACATAGAACCACAAGTAAAGCTGAAGAGGCAATGCAAGAAGCTATTGATCTTAAGCAAATTAAGATGAAGTATCAGGAGGAACTGAAATCTGTTCAGCAGGAAAAAATACAGCTAAAAAGAGAAGTAGAGGAATTAACTAGATCACAAGCAAAAACTGAAATCACTATCAAACATTTAAATTCACAAATCAGTTCTCTTCAAAAAGAGACACTGGCAGCTGAACACAGAATGCAGTCATGCAAAGGAGAAGCAAATTATCTTCAAGATCAGTATAAGAAAATTCAGGAGCAATTGCTTCATAAAACAAAAAGAGAGGAAGAAAACCTGCAGGAAATTCAGATGCTGAAGAATGAATTAACCAAAAGCAATCAGATGTCAGAAACATTGAAACGAAAGATCGATGATCTTAATAAATGGAATACTGAAACAAAACTACAGATGAAGCAGATTCAATCCGAGTCAGAGAAGATGACTTTGGAAAAACAAAGTATTCAGAGGAAAAATGACGCATTAAAAACCCTAGCAGATGGTTTCAAAGAGCAACTGCGTACAACAAATGAACAACTGCACAAGCAAACAATAATAGAGCAAGAATTCATATGTAAAATCAAAAGCCTAGAAGATGATCTTGCTAAAACAAAAGACTTAGTTAGTGAATATAAACAAAAATATGATAAACAAAATGCTTCTGCCCTAACCACTGACCTGGAGATTAAAAATCTAAATGCCCAAATGTGTACTCTATCTACGGAAAAGAGAGTGAATGAGCAGAAAATACAGCTGCAAGAAGCTCATATACAAGAGCTAAGTAGTAAATTAAAAAAATTACAGGATGAACTCCATCAGAAGACTCTGGATGAACAAATGGCACGCAAGAAAATGATTCTGTTTCAGGAAGAATCAGTCAAATTTAAACACTCCGCAGAGGAATTCAGGAAAAAAGTGGAAAAATTACTAGAATCTCATAGCATCACAGAAAAGGACATTTCTGGCATAAAATTAGAGTGTGTTGCTCTTCAACAGGAAAAGCAGTTGGCTGAGGAAAGCATCATGCTGTACAAGAGACAGATTGAAGATCTGCAAGAAAGGCTTAAAAAATGTCAAGAACAACTACAGCAAGGAAAGCATGCTGAAATGGACTATCATCAGAAGTGCAGGAAACTTGAGGAAGAGTTGGAAGTGCAGAAGCACCTGGTTGAGGACATGAAACAGAAGATGGACCTGCAGGTCAAGGAAAGCGAACATAGGTTTCTTTTGTTTCAGAGTGAAATTCAACAGAATAATAAAATCAAAGATTGTGAATTTAAATTGAGCTGTGAGAGAAGAGGAAATGAATTGAATTACCTGAATGACACCTCACGTAGAGAATTTGAACAGCATCCTTCACATGTAAAACCTTGTTCGCCTTTGTTAAGGCAGAAACAGGAGAGAACGAGTTTTAAATCTGATCAAATAGAAGAAAATATGCTGTATGTGAGTGCAGATGATACAATACCAAGGGAGGTGCAGTTCCAGATGTCAAGAATAAATCAATCACTAGAAGATGCAAGACCACAATCTTTTACAGAGTTTGTTTCTCAAACAAGTACCCAGTTCCAGATAACCTTTGATAAATCAAGTGAAATCACTGGAATATCTGAAAGAGACAAATTGAGAAACAGGAACATACACAGTTCCAGACAAACAAGTAGGCCTGGAGAAGACATGAAACTTGAATTAGGATTAGTAAAAATGCATCCCTTGGAG
Seq C2 exon
AGGTCAATGGAAGAAGAAAAAAAAGAACATGTTGAGAAGGCTGGGGATTTACTGAAATGGGTGTCAAACCTCAGCAAGACACTCAGCAAAGAAGGAGGAGAAAAGGCTGAAAAGACAGATTTGCCTAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289_MULTIEX1-4/5=C1-C2
Average complexity
ME(1-4[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.321 C2=0.601
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068115=Plectin=PD(9.5=16.7)
Main Inclusion Isoform:
ENSGALT00000026264fB6988
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]