BtaEX0012407 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044033 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:HGNC:3173]
Coordinates
chr7:86304197-86378609:-
Coord C1 exon
chr7:86378496-86378609
Coord A exon
chr7:86344855-86345036
Coord C2 exon
chr7:86304197-86304352
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTAATTTGTTCCTAGAAT
3' ss Score
7.94
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATATAAATGAATGCGAAGCTGAGCCCTGCAAAAATGGTGGGATATGTACAGACCTTGTTGCTAACTATTCCTGTGAGTGCCCAGGAGAATTCATGGGAAGAAATTGTCAGTACA
Seq A exon
AATGCTCTGGCCCATTGGGAATTGAAGGGGGAATCATTTCAAATCAGCAAATCACAGCTTCATCTACCCACCGAGCTCTTTTTGGACTCCAGAAGTGGTATCCCTACTATGCACGTCTGAATAAGAAGGGACTTATAAATGCCTGGACAGCTGCAGAAAATGACAGATGGCCATGGATTCAG
Seq C2 exon
ATAAATTTACAGAGAAAAATGAGAGTTACTGGTGTGATTACTCAAGGAGCCAAGAGGATTGGAAGTCCAGAGTATATCAAATCCTACAAAATAGCATATAGTAATGATGGAAAAACTTGGACAATGTACAAAGCGAAAGGCACCAATGAAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044033-'7-9,'7-7,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(89.5=87.2)
A:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
C2:
PF0075420=F5_F8_type_C=FE(36.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAGCCCTGCAAAAATGG
R:
TGGTGCCTTTCGCTTTGTACA
Band lengths:
243-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development