DreEX0028924 @ danRer10
Exon Skipping
Gene
ENSDARG00000093413 | edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:ZFIN;Acc:ZDB-GENE-060503-366]
Coordinates
chr5:46130955-46208427:-
Coord C1 exon
chr5:46208314-46208427
Coord A exon
chr5:46164978-46165159
Coord C2 exon
chr5:46130955-46131110
Length
182 bp
Sequences
Splice sites
3' ss Seq
TATTTGTGTGTATTCCACAGAAT
3' ss Score
9
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATGTTAATGAATGCGAACGAAGCCCCTGCAGAAACGGCGGGATCTGCACAGATCTGGTTGCGAACTATTCCTGTGAATGCCCGGGGGAATATATGGGAAGAAATTGCCAGTACA
Seq A exon
AATGTTCTGGTCCACTGGGCATGGAGGGTGGCATCATCTCCAACCAGCAGATAACAGCCTCATCTACTCACCGAGCTCTCTTCGGCCTCCAGAAGTGGTACCCCTACTTTGCCCGGCTGAATAAGAAGGGCCTGGTGAACGCCTGGACTGCAGCCGAGAATGACAGATGGCCCTGGATTCAG
Seq C2 exon
ATTAACCTGCAGAGGAGGATGCGGGTCACAGGAGTGATAACCCAAGGAGCCAAGCGCATCGGGAGCCCAGAATATGTTAAGTCCTACAAAGTGGCCTACAGCGATGACGGAAAGACCTGGAGGACATACAAAGTCAAGGGCACAGATGAAGACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093413-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(89.5=89.5)
A:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
C2:
PF0075420=F5_F8_type_C=FE(37.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGAAGCCCCTGCAGAAAC
R:
TGTCTTCATCTGTGCCCTTGAC
Band lengths:
254-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]