RnoEX0030801 @ rn6
Exon Skipping
Gene
ENSRNOG00000033064 | Edil3
Description
EGF like repeats and discoidin domains 3 [Source:RGD Symbol;Acc:1588887]
Coordinates
chr2:17886174-17982830:+
Coord C1 exon
chr2:17886174-17886287
Coord A exon
chr2:17927710-17927891
Coord C2 exon
chr2:17982675-17982830
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTGATTTCTTTCCAGAAT
3' ss Score
9.78
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATATAAATGAATGTGAAGCTGAGCCTTGCAGAAATGGTGGAATATGTACGGACCTTGTTGCCAACTACTCCTGTGAATGCCCAGGAGAATTTATGGGACGGAATTGTCAATATA
Seq A exon
AATGCTCTGGGCCATTGGGAATTGAAGGTGGGATCATATCTAACCAGCAAATCACAGCTTCATCTACACATCGAGCTCTTTTTGGACTACAGAAATGGTATCCCTACTATGCTCGGCTTAATAAGAAGGGCCTTATAAATGCCTGGACAGCTGCTGAAAATGACAGATGGCCGTGGATTCAG
Seq C2 exon
ATAAATTTACAAAGAAAAATGAGAGTAACGGGTGTTATTACCCAAGGAGCCAAAAGGATTGGAAGCCCAGAATACATCAAATCCTACAAAATTGCCTACAGCAATGACGGGAAGACCTGGGCAATGTACAAAGTAAAAGGCACCAATGAAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033064-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(89.5=87.2)
A:
PF0075420=F5_F8_type_C=PU(31.7=72.1)
C2:
PF0075420=F5_F8_type_C=FE(36.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCTGAGCCTTGCAGAA
R:
GCCTTTTACTTTGTACATTGCCCA
Band lengths:
243-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]