BtaEX0012948 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112838880-112841772:+
Coord C1 exon
chr5:112838880-112838989
Coord A exon
chr5:112840429-112840566
Coord C2 exon
chr5:112841335-112841772
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTGTGTACAGCCT
3' ss Score
7.32
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTTGAATCAGTTTGGCCAGATGAGTATGCCTCAGCCCCCTATTGGACCCCGGCAAAACTCTCCTCTTCAGCACCATGTACAGTTAGCTCAAACTGGAACACTTAACCCG
Seq A exon
CCTATGGGCTACGGGCCTCGCATGCAGCAGCCTTCCAGCCAGAGCCAGTTTCTTCCTCAGACTCAATTCTCAACACAGGGAATGAATGTAACAAATATGCCTTTGGCTCCGTCTGGCGGTCAAGCACCAGTGTCTCAA
Seq C2 exon
GCACAGATGTCCAGTTCTTCCTGTCCTGTGAACTCTCCTATAATGCCTCCTGGGTCTCAAGGGAGCCACATTCACTGTCCCCCTCTCCCTCAACCAGCTCTGCATCAGAACTCACCCTCACCCGTACCTAGTCGCACCCCCACCCCTCACCACACTCCCCCTAGCATAGGGGCTCAGCAGCCACCAGCAACAGCAATCCCAGCCCCTGTTCCTACGCCTCCAGCCATGCCACCTGGCCCACAGTCCCAGGTTCTCCATCCGCCTCCAAGACAGACGCCTACGCCGCCACCAACACAACTTCCTCCCCAAGTGCAGCCTTCGCTTCCTGCTGCTCCCTCAGTCGACCAGGCGCAGCAGCAGCCTCTGTCCCAGCAAAGCACAGCAGCCTCTGTGCCCACCCCGACGGCACCCCTGCTGCCTCCGCAGCCGGCAACTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTATGCCTCAGCCCCCTAT
R:
TATGCTAGGGGGAGTGTGGTG
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development