MmuEX0016942 @ mm10
Exon Skipping
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81624525-81627534:+
Coord C1 exon
chr15:81624525-81624634
Coord A exon
chr15:81626338-81626475
Coord C2 exon
chr15:81627103-81627534
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTGTTTATTTGCAGCCT
3' ss Score
9.81
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTTGAATCAATTTGGGCAGATGAATATGCCACAGCCCCCTATTGGACCCCGGCAACCCTCTCCTCTTCAGCACCATGGACAATTGGCTCAGTCTGGGTCACTCAATCCG
Seq A exon
CCTATGGGCTATGGACCTCGCATGCAGCAGGCTTCCGGCCAGAACCAGTTCCTCTCCCAGACTCAGTTCACATCCCAAGGAATGAATGTAACAAACATGCCTTTGGCTCCATCCAGCGGTCAAGCACCAGTGTCTCAA
Seq C2 exon
GCACAAATGTCCAGTTCTTCTTGCCCAGTGAACTCTCCTATAATGCCTCCAGGGTCTCAAGGGAGCCACATTCACTGTCCTACTCTGCCTCAACAAGCTCATCAGAATTCACCTTCTCCTGTTCCTAGCCGCACCCCTACTCCTCATCATACCCCCCCAAGCATAGGGAATCAACCACCACCAGCAACAGCAATTCCAACACCTGTTCCTACACCTCCTGCCATACCACCTGGACCACAGCCCCCATCTCTGCATCCCTCATCTAGACAAACACCTACACCACCAACACATCTGCCTCCCCAAGTGCAGCCTTCACTTCCTGCTGCTCCTTCTGCTGACCAGTCCCAGCAACAGCCTCGGTCACAGCAGAGCACAGCAGTTTCTGTTCCTACCCCAACAGCACCATTGCTGCCTCCTCAGCCTTCCACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024-'28-26,'28-25,30-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCTCAGTCTGGGTCACT
R:
TGGTATGGCAGGAGGTGTAGG
Band lengths:
256-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types