GgaEX1022535 @ galGal4
Exon Skipping
Gene
ENSGALG00000011992 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr1:49659197-49661404:-
Coord C1 exon
chr1:49661295-49661404
Coord A exon
chr1:49660670-49660825
Coord C2 exon
chr1:49659197-49659637
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTCCTTTCTTTTCCAACAGATG
3' ss Score
12.04
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAATGAATCAGTTTGGCCACATGAACATGCAGCTGTCACCGATGGGACCCCGGCAAACCCCTCCTCTTCAGCACCCTGGACAGCTAAGCCAGGCCGGGGCCATGAACCAG
Seq A exon
ATGGGATTTCCTTCACGTATGCAACAACCAGGAGTTGGCCAACCTTCTGGTCAAAATCAGTTTCTGCAGCAGAACCCATTCCCTGCTTCTTCCCCAGGAATGAATGCAGCAAGCATGCCTATGACACAAACTAGCAATCAGACACCAGTTTCTCAA
Seq C2 exon
GCACAAATGAACAGCTCTTCCTGTCCTGTGAATTCTCCTGCCATGGCTCCAGGTTCTCAAGGAAGCCATATTCACTGCCCACCTCTTCCACAGCCTCCCATGCACCGAAATTCTCCTTCTCCAGTACCTAGTCGAACCCCAACACCTCACCATACACCCCCAGGCTTGGGATCGCAGCAACAGCAGGCAGCAGCAGCTGCCACCGCTGTTCCCACCCCTACTCCTCAGACAGTGCCACCCGGACCACAGTCACAAACTATGCATCCCCCGCAGAGGCAGACTCCAACACCTCCGCAGGCACAGCTGCCTCCACAAGTCCAGCCTCCAGTTCCAGTTACCCCCTCTGCAGAGCAGCAACAGCAACCCTTGTCACAGCAGAGTACAACAGCATCAGTTCCCACACCAACAGCACCACTGCAGCCTCAGCACCCCACAACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992-'19-23,'19-18,20-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATGCAGCTGTCACCGAT
R:
TGTATGGTGAGGTGTTGGGGT
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]