BtaEX0014229 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:62113090-62113994:+
Coord C1 exon
chr10:62113090-62113215
Coord A exon
chr10:62113617-62113678
Coord C2 exon
chr10:62113788-62113994
Length
62 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCTTGTTTTCCCCAGATG
3' ss Score
11.88
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
ATGAAAATGAATGTCAGACCAAGCCTGGGATCTGTGAGAACGGGCGCTGCCTCAACACCAGGGGGAGCTATACCTGCGAGTGCAATGACGGCTTTACAGCCAGCCCCAACCAGGATGAGTGCCTCG
Seq A exon
ATGTCATCCTTTTTCTCTTACTGCTGCTTCCAGCTTTCCCTTCTTGCTCCTTCTCAGCCAGG
Seq C2 exon
ACAACCGAGAAGGGTACTGCTTCACGGAGGTGCTCCAGAACATGTGTCAGATCGGCTCAAGCAACAGGAACCCCGTCACTAAGTCTGAATGCTGCTGCGATGGAGGGAGAGGCTGGGGGCCCCACTGTGAGATCTGCCCTTTCCAGGGCACTGTGGCTTTCAAAAAACTCTGCCCCCATGGCCGAGGGTTTATGACCAATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NO
C2:
PF0068312=TB=WD(100=62.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
ENSBTAT00000002944fB2721
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCAGGGGGAGCTATACC
R:
TTCCTGTTGCTTGAGCCGATC
Band lengths:
143-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development