GgaEX0006796 @ galGal3
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11685728-11686718:-
Coord C1 exon
chr10:11686593-11686718
Coord A exon
chr10:11686043-11686101
Coord C2 exon
chr10:11685728-11685934
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTTTGTTTCCCTTAGACG
3' ss Score
10.23
5' ss Seq
AGGGTGAAG
5' ss Score
1.19
Exon sequences
Seq C1 exon
ATGAGAATGAATGTCAGACCAAGCCTGGGCTCTGTGAGAATGGTCGGTGTGTAAACACAGTGGGAAGTTACAGATGTGAATGCAATGAGGGATTCACAGTCAGTGACACTCAGAACGAATGCCTTG
Seq A exon
ACGTCGTGCTCTCTTTCTTACTGCTGGTAGTCTTTCACTCTCAGTTGCACAGTCCCAGG
Seq C2 exon
ACAACAGGGAAGGCTACTGCTTCACTGAAGTCTTACAAAGTATGTGTCAAATTGGATCAAGCAACAGGAACTCTGTCACCAAGTCTGAATGCTGCTGTGATGGTGGCCGAGGCTGGGGGCCGAACTGCGAGGTCTGCCCCTTCCCAGGCACTGTGGCCTTTAAGAAGCTTTGTCCTCATGGTCGGGGGTACATGTCCAATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'60-66,'60-65,61-66
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NO
C2:
PF0068312=TB=WD(100=62.9),PF0764510=EGF_CA=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCAGTGACACTCAGAACG
R:
CCACCATCACAGCAGCATTCA
Band lengths:
137-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]