MmuEX0018731 @ mm10
Exon Skipping
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125314594-125315484:-
Coord C1 exon
chr2:125315359-125315484
Coord A exon
chr2:125314907-125314967
Coord C2 exon
chr2:125314594-125314800
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCTTGTTTCCGTCAGACG
3' ss Score
6.96
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
ATGAGAATGAGTGTCAGACCAAGCCCGGGATCTGTGAGAATGGGCGTTGCCTCAACACCCTGGGTAGCTACACTTGTGAGTGTAACGATGGCTTCACAGCCAGCCCCACTCAGGATGAGTGCTTGG
Seq A exon
ACGCCTCCTTTCTCTCTCCCTGCTGTTTCCAGCTTTCGCTTCTTGCTCCTCTTCACCCAGG
Seq C2 exon
ACAACCGGGAAGGGTACTGCTTTTCGGAGGTCTTGCAAAACATGTGCCAGATTGGCTCAAGCAACAGGAACCCCGTCACCAAGTCCGAGTGCTGCTGTGATGGAGGGAGAGGCTGGGGACCCCACTGTGAGATCTGCCCTTTCGAGGGCACAGTGGCTTACAAGAAGCTCTGTCCCCACGGCCGAGGATTCATGACCAACGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NO
C2:
PF0068312=TB=WD(100=62.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
ENSMUST00000028633fB1656
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCGGGATCTGTGAGAAT
R:
CCGAAAAGCAGTACCCTTCCC
Band lengths:
133-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types