BtaEX0014242 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18047144-18048585:-
Coord C1 exon
chr7:18048463-18048585
Coord A exon
chr7:18048167-18048292
Coord C2 exon
chr7:18047144-18047269
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCCCTACCCTGGTCCCCCAGATG
3' ss Score
9.09
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
ATGTGGACGAGTGCCGCACCAGGAACGGTGGTTGCCACGTCCACTGTGTTAACACTAAGGGCAGCTACCAGTGCGAATGCGGACCTGGCTACTCTCTGATGCCCGATGGGAGGGCGTGTGAAG
Seq A exon
ATGTGGACGAATGTGAGCAGAATCCGGACATCTGTGATGGGGGCCAGTGCACCAACATGCCAGGGGGTCACCGCTGCCTCTGCTATGACGGCTTTGTGGCCACGTTGGACATGAGGATGTGTGTAG
Seq C2 exon
ACGTGGACGAGTGTGACCTGAACCCCCACATCTGCCTCCATGGGGTCTGCGAGAACACCAGGGGCTCCTTTGTCTGCCACTGCCAGCTGGGTTACATCGTCAGGAAGGGGGCCATGGGCTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(83.3=47.6)
A:
PF126622=cEGF=PD(12.5=7.0),PF146701=FXa_inhibition=WD(100=86.0),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGACGAGTGCCGCA
R:
GCCCCCTTCCTGACGATGTAA
Band lengths:
235-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development