GgaEX1024591 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:344635-345440:+
Coord C1 exon
chr28:344635-344757
Coord A exon
chr28:345044-345169
Coord C2 exon
chr28:345315-345440
Length
126 bp
Sequences
Splice sites
3' ss Seq
AACAGTCTCCTTCTTTCTAGATA
3' ss Score
8.05
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ACATTGATGAGTGCACCATAACCAATGGTGGCTGTGACACACACTGCTCCAACTCGGAGGGCAGCTATGAGTGCAGCTGCAGTGAAGGCTATGCACTGATGCCGGACAAGAGATCATGTGCAG
Seq A exon
ATATTGATGAATGTGAGGATAATCCAGACATCTGTGATGGCGGGCAGTGCACAAACATCCCTGGGGAATATCGCTGCCTCTGCTTTGATGGCTTCATGGCATCCCTGGACATGAAGACTTGCATTG
Seq C2 exon
ATGTGAATGAATGTGATCTTAACCCCAACATCTGCCTGCATGGCGAGTGTGAAAACACAAAGGGCTCCTTCATCTGTCACTGCCAGCTGGGCTACTTTGTCAAGAAGGGAACCACAGGTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'30-37,'30-36,31-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGATGAGTGCACCATAACCA
R:
GCAACCTGTGGTTCCCTTCTT
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]