MmuEX6001705 @ mm9
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58227920-58229183:-
Coord C1 exon
chr18:58229061-58229183
Coord A exon
chr18:58228782-58228907
Coord C2 exon
chr18:58227920-58228045
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGCTACCTTTGTGTCATCAGATA
3' ss Score
6.34
5' ss Seq
TCGGTGGGT
5' ss Score
6.9
Exon sequences
Seq C1 exon
ATATCGACGAGTGTATGATAATGAATGGGGGCTGCGACACCCAGTGCACCAACTCCGAAGGAAGCTACGAGTGCAGCTGCAGCGAGGGGTACGCACTGATGCCAGACGGACGGTCGTGCGCAG
Seq A exon
ATATTGATGAGTGTGAAAATAACCCCGATATCTGTGACGGCGGCCAGTGTACCAACATTCCTGGGGAGTATCGCTGTCTCTGTTATGATGGCTTCATGGCTTCGATGGACATGAAGACATGCATCG
Seq C2 exon
ATGTGAACGAGTGTGACCTGAATCCCAACATCTGCATGTTTGGGGAATGTGAGAACACGAAGGGCTCTTTCATTTGCCACTGCCAGCTGGGCTACTCGGTGAAGAAGGGGACCACAGGATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACGAGTGTATGATAATGAATGGG
R:
GCATCCTGTGGTCCCCTTCTT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: