GgaEX6050690 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56635557-56637599:-
Coord C1 exon
chrZ:56637477-56637599
Coord A exon
chrZ:56637222-56637347
Coord C2 exon
chrZ:56635557-56635682
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTACTTTTATTTCAGATA
3' ss Score
9.58
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATATTGATGAATGTATGATAATGAATGGTGGCTGTGACACCCACTGCACCAACTCAGAGGGCAGCTACGAATGTAGCTGCAGTGATGGTTATGCTCTAATGCCAGATGTCAGGACGTGTGCGG
Seq A exon
ATATTGATGAATGTGAAAACAATCCAGATATATGTGATGGAGGGCAATGTAGTAACATTCCAGGGGAGTATCGCTGTCTCTGTTATGATGGATTTATGGCTTCTATGGACATGAAAACTTGTATTG
Seq C2 exon
ATGTGAATGAATGTGATTTGAATTCCAACATTTGTATGTTTGGGGAGTGTGAGAACACTAAAGGTTCCTTCATTTGTCACTGCCAGCTAGGATATTCAGTCAAGAAAGGAACTACTGGATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'37-39,'37-38,38-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTATGATAATGAATGGTGGCT
R:
CTGTGCATCCAGTAGTTCCTT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]