BtaEX6039523 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26859429-26860287:+
Coord C1 exon
chr7:26859429-26859551
Coord A exon
chr7:26859716-26859841
Coord C2 exon
chr7:26860162-26860287
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTTGATTTTGTGCCATCAGATA
3' ss Score
6.94
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
ATATTGATGAGTGCATGATAATGAATGGAGGCTGTGACACGCAGTGCACTAATGCAGAAGGAAGCTATGAATGTAGCTGCAGTGAAGGGTATGCCCTGATGCCCGATGGGAGGTCATGTGCAG
Seq A exon
ATATTGATGAATGTGAAAATAATCCTGATATCTGTGATGGTGGGCAGTGTACCAACATTCCTGGAGAGTACCGTTGTCTGTGTTATGATGGCTTCATGGCTTCCATGGACATGAAAACGTGCATTG
Seq C2 exon
ACGTGAATGAGTGTGACTTAAATTCCAACATCTGCATGTTCGGGGAATGTGAGAACACCAAGGGATCCTTCATTTGCCACTGTCAGCTGGGGTATTCAGTGAAGAAAGGGACCACAGGATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'66-66,'66-65,67-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCATGATAATGAATGGAGGC
R:
CTGTGCATCCTGTGGTCCCTT
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]