BtaEX0014404 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000712 | FBXW2
Description
Bos taurus F-box and WD repeat domain containing 2 (FBXW2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076974]
Coordinates
chr8:112067742-112070035:-
Coord C1 exon
chr8:112069841-112070035
Coord A exon
chr8:112068519-112068609
Coord C2 exon
chr8:112067742-112067875
Length
91 bp
Sequences
Splice sites
3' ss Seq
AAACTCTGCTCATCCTTCAGGGC
3' ss Score
7.96
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGTCAGACGACTTGTCTGCAAAGCTGTGGGATGTGAGCACAGGGCAGTGTGTTTATGGCATCCAGACCCACACTTGTGCTGCGGTGAAGTTTGATGAGCAGAAGCTTGTGACAGGCTCCTTTGACAACACTGTGGCCTGCTGGGAGTGGAGCTCCGGAGCCAGGACCCAGCACTTCCGGGGGCACACGGGGGCGG
Seq A exon
GGCCCACCTCCAATATCGCCTCTTCCCTGAAGTCCTCCCTGATCCCCCTGGGCAGAGTTAGTCATTCTCCTTGGTGTTTCCCTAGCAAGAG
Seq C2 exon
TGTTCAGTGTCGACTACAACGACGAACTGGACATCTTGGTGAGTGGCTCTGCAGACTTCACTGTCAAAGTGTGGGCTTTATCTGCTGGGACGTGCCTGAACACACTCACCGGGCACACAGAGTGGGTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000712_MULTIEX1-3/6=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
A:
NO
C2:
PF0040027=WD40=PD(64.1=55.6)
Main Inclusion Isoform:
ENSBTAT00000000956fB2750
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTGACAACACTGTGGCC
R:
GTCCCAGCAGATAAAGCCCAC
Band lengths:
170-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development