RnoEX0035461 @ rn6
Exon Skipping
Gene
ENSRNOG00000018687 | Fbxw2
Description
F-box and WD repeat domain containing 2 [Source:RGD Symbol;Acc:1310460]
Coordinates
chr3:13879426-13881559:-
Coord C1 exon
chr3:13881365-13881559
Coord A exon
chr3:13880200-13880205
Coord C2 exon
chr3:13879426-13879559
Length
6 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCAGTGTTTTTCTAGCAA
3' ss Score
4.76
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGTCAGATGATTTGTCTGCAAAGCTGTGGGATGTAAGCACAGGGCAGTGTGTTTACGGCATCCAGACCCACACTTGTGCAGCCGTGAAGTTCGATGAACAGAAGCTTGTGACAGGCTCCTTTGACAACACTGTGGCCTGCTGGGAATGGAGTTCCGGAGCCAGGACCCAGCACTTCCGGGGGCACACAGGGGCGG
Seq A exon
CAACAG
Seq C2 exon
TGTTCAGTGTGGACTACAGTGATGAACTGGATATTTTGGTGAGTGGCTCTGCGGACTTCGCTGTGAAAGTATGGGCTTTATCTGCTGGGACATGCCTGAACACACTCACTGGGCACACAGAATGGGTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018687-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
A:
PF0040027=WD40=FE(4.9=100)
C2:
PF0040027=WD40=PD(64.1=55.6)
Main Inclusion Isoform:
ENSRNOT00000025399fB5462
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGAGTTCCGGAGCCAG
R:
CGCAGAGCCACTCACCAAAAT
Band lengths:
105-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]