BtaEX0014623 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34978429-34979909:-
Coord C1 exon
chr18:34979727-34979909
Coord A exon
chr18:34979522-34979641
Coord C2 exon
chr18:34978429-34978619
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCCCTGATCTCCCCTACCAGGAA
3' ss Score
10.1
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAGCTACTGACCATGATGCCCACGGAGGAGGAGCGGCAGAAGATCGAGGAGGCCCAGCTGGCCAATCCCGACGTACCCTTGGGCCCAGCCGAGAATTTCCTGATGACTCTCGCCTCCATCGGGGGCCTGGCTGCCCGCCTACAACTCTGGGCCTTCAAACTGGATTATGACAGCATGGAGCGG
Seq A exon
GAAATTGCAGAGCCACTGTTCGACCTGAAAGTGGGCATGGAACAACTGGTGCAAAATGCCACCTTCCGCTGCATCCTGGCCACCCTGCTGGCTGTGGGCAACTTCCTCAATGGCTCCCAG
Seq C2 exon
GTGGACTTTGAGCAGCTGACTGAGAACCTGGGGCAGCTGGAGCGCCGGAGCCGGGCAGCTGAAGACAGCCTGCGGAGCCTGACCAAGCATGATCTGGCTCCAGCCCTGCGTGCCCGCCTCACCCACTTCCTGGTGCACTGTACCCGCCGTGTTGCCATGCTGAGGGTCGTACACCGCCGTGTCTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427_MULTIEX1-10/15=9-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.1=100)
A:
PF0218118=FH2=FE(10.5=100)
C2:
PF0218118=FH2=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCCGAGAATTTCCTGAT
R:
GGTACAGTGCACCAGGAAGTG
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development