HsaEX6044348 @ hg19
Exon Skipping
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:17905]
Coordinates
chr16:67265091-67265722:-
Coord C1 exon
chr16:67265540-67265722
Coord A exon
chr16:67265333-67265452
Coord C2 exon
chr16:67265091-67265252
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCCCTGGTCTCCCATACCAGGAA
3' ss Score
8.54
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAGCTACTGACCATGATGCCCACGGAGGAAGAGCGGCAGAAGATTGAGGAAGCCCAGCTGGCCAACCCTGACATACCCCTGGGCCCAGCCGAGAACTTCCTGATGACTCTTGCCTCCATTGGCGGCCTCGCTGCTCGTCTACAACTCTGGGCCTTCAAGCTGGACTATGACAGCATGGAGCGG
Seq A exon
GAAATTGCTGAGCCACTGTTTGACCTGAAAGTGGGTATGGAACAGCTGGTACAGAATGCCACCTTCCGCTGCATCCTGGCTACCCTCCTAGCGGTGGGCAACTTCCTCAATGGCTCCCAG
Seq C2 exon
AGCAGCGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAGGTGAAGGACACGGTGCGTCGACAGTCACTGCTACACCATCTCTGCTCCCTAGTGCTCCAGACCCGGCCTGAGTCCTCTGACCTCTATTCAGAAATCCCTGCCCTGACCCGCTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(17.1=81.8)
A:
PF0218118=FH2=FE(10.5=100)
C2:
PF0218118=FH2=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAAGATTGAGGAAGCCC
R:
AGCACTAGGGAGCAGAGATGG
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)