DreEX6006117 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34334106-34338229:+
Coord C1 exon
chr7:34334106-34334288
Coord A exon
chr7:34335703-34335822
Coord C2 exon
chr7:34338068-34338229
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTACCCATGAATGTTGCAGGAG
3' ss Score
5.68
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
AAAATCCTAACCATGACACCAACAGAGGAAGAGAAACAGAAGATTCAGGAGGCTCAGCTGGCCAATCCGGATGTACCGCTGGGCACTGCAGAGCAGTTCCTGCTCACACTCTCCTCTATCAGCGGCCTAACAGCCAGATTACAGCTCTGGGCCTTTAAACTCAACTATGAGACCCTTGAGAAG
Seq A exon
GAGATTGCAGAGCCTCTTTTTGACCTGAAGCAGGGCATGGAACAACTCGCCAAGAACAAAACCTTCAAACGTATCCTAGCAACACTACTGGCCATTGGCAACTTCCTAAACAGCTCAAGG
Seq C2 exon
GCGAAGGGCTTTGAGCTCGGTTATCTGGAGAAGGTGACCGAGGTGAAGGACACTGTGCACAGACAGTCTCTGCTTCATCATACCTGCAATTTTGTGGTGGAAAATTACCCAGACACGACTGACCTTTACTCTGAGATCCCTGCTATCACACGCTCTGCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'21-24,'21-23,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.3=100)
A:
PF0218118=FH2=FE(10.6=100)
C2:
PF0218118=FH2=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCTGCTCACACTCTCCT
R:
AGCGTGTGATAGCAGGGATCT
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]