BtaEX0015093 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66986096-66992758:+
Coord C1 exon
chr3:66986096-66986173
Coord A exon
chr3:66992472-66992531
Coord C2 exon
chr3:66992613-66992758
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATTTAGGGGGTTTTTTTTAGGTC
3' ss Score
5.4
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
AAGGAGATCAGCAGAATCCAGCTCCAGCTGGACAGGTTGATTATACCAAGGCTTGGGAAGAGTACTACAAGAAAATGG
Seq A exon
GTCAACAAGGGCAGACACAAGATTATTCAAAGGCTTGGGAGGAATATTACAAGAAGCAAG
Seq C2 exon
GTCAAGCAGTTCCTGCTCCTACTGGTGCTCCACCAGGTGGTCAGCCAGATTATAGTGCAGCCTGGGCTGAGTACTATAGACAACAAGCAGCCTACTATGCCCAGACAAGTCCCCAGGGAATGCCACAGCATCCTCCAGCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=0.857 C2=0.796
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PU(78.6=81.5)
A:
PF090055=DUF1897=PD(17.9=23.8),PF090055=DUF1897=PU(75.0=85.7)
C2:
PF090055=DUF1897=PD(17.9=10.2),PF090055=DUF1897=WD(100=67.3)
Main Inclusion Isoform:
ENSBTAT00000011751fB2875
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATCAGCAGAATCCAGCT
R:
GCCCAGGCTGCACTATAATCT
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development