GgaEX1025663 @ galGal4
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17802841-17811169:+
Coord C1 exon
chr8:17802841-17802920
Coord A exon
chr8:17806685-17806759
Coord C2 exon
chr8:17811024-17811169
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTTGCTCAATTCAGGAG
3' ss Score
7.28
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TGGTCCTCCAGCTCCGTATGCTCCACAAGGGTGGGGAAATGCTTATCCACACTGGCAGCCACCAAATCCACCAGATCCAG
Seq A exon
GAGATCAGCCAAACCCAGCACCAGCAGGGCAGGTTGACTACACAAAGGCATGGGAGGAATACTACAAAAAAATGG
Seq C2 exon
GTCAAGCAGTTCCTGCACCTGCTGGAGCTCCGCCAGGTGGTCAGCCGGATTACAGCGCAGCATGGGCTGAGTACTACAGGCAGCAGGCAGCATACTATGCCCAGACAAGTCCCCAGGGAATGCCGCAACATCCTCCAGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCAAATCCACCAGATCC
R:
CTGTGGTGCTGGAGGATGTTG
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]