GgaEX1025663 @ galGal3
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19606133-19611400:+
Coord C1 exon
chr8:19606133-19606261
Coord A exon
chr8:19606916-19606990
Coord C2 exon
chr8:19611255-19611400
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTTGCTCAATTCAGGAG
3' ss Score
7.28
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GAAAGCCAGGAACAGATCCTAATTCAGCAGCATGGGCAGCTTACTATGCTCACTACTATCAGCAGCAAGCACAGCCACCACCTGCAGCCCCTCCTGGTGGACCAGCTACAACCCAAACCAACGGGCAAG
Seq A exon
GAGATCAGCCAAACCCAGCACCAGCAGGGCAGGTTGACTACACAAAGGCATGGGAGGAATACTACAAAAAAATGG
Seq C2 exon
GTCAAGCAGTTCCTGCACCTGCTGGAGCTCCGCCAGGTGGTCAGCCGGATTACAGCGCAGCATGGGCTGAGTACTACAGGCAGCAGGCAGCATACTATGCCCAGACAAGTCCCCAGGGAATGCCGCAACATCCTCCAGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939-'27-27,'27-24,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.846 C2=0.796
Domain overlap (PFAM):
C1:
NO
A:
PF090055=DUF1897=PU(75.9=84.6)
C2:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACAACCCAAACCAACGG
R:
CTGTGGTGCTGGAGGATGTTG
Band lengths:
172-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]