RnoEX0037087 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257443255-257447891:+
Coord C1 exon
chr2:257443255-257443392
Coord A exon
chr2:257445020-257445094
Coord C2 exon
chr2:257447746-257447891
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTGTTTTTTAAAAAGGAG
3' ss Score
6.74
5' ss Seq
TGGGTATGC
5' ss Score
6.57
Exon sequences
Seq C1 exon
CTAAGGCAGGAACGGATCCAAACTCGGCAGCTTGGGCTGCCTATTATGCCCACTATTACCAGCAGCAGGCACAGCCCCCGCCTGCAGCTCCTGCTGGAGCACCAACCACAACCCAGACTAATGGACAAGGTAACTACG
Seq A exon
GAGATCAGCAGAATCCAGCTCCAGCTGGACAAGTTGATTATACAAAGGCTTGGGAAGAGTACTACAAGAAAATGG
Seq C2 exon
GTCAAGCAGTTCCTGCTCCTGCTGGGGCCCCACCAGGTGGTCAGCCAGATTACAGTGCAGCCTGGGCTGAATACTATAGACAGCAAGCAGCATACTATGCCCAGACCAGTCCCCAGGGAATGCCGCAGCATCCGCCAGCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-'22-28,'22-27,24-28
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.745 A=0.562 C2=0.776
Domain overlap (PFAM):
C1:
NO
A:
PF090055=DUF1897=PU(75.9=84.6)
C2:
PF090055=DUF1897=PD(20.7=12.2),PF090055=DUF1897=WD(100=67.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGCTGCCTATTATGCCC
R:
CCAGGCTGCACTGTAATCTGG
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]