HsaEX6031742 @ hg38
Exon Skipping
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77949155-77956700:-
Coord C1 exon
chr1:77956572-77956700
Coord A exon
chr1:77955255-77955329
Coord C2 exon
chr1:77949155-77949300
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTGCTTGAACAAGGAG
3' ss Score
3.02
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CTAAGGCAGGAACGGATCCAAATTCAGCAGCTTGGGCTGCTTATTACGCTCACTATTATCAACAGCAAGCACAGCCACCACCAGCAGCCCCTGCAGGTGCACCAACTACAACTCAAACTAATGGACAAG
Seq A exon
GAGATCAGCAGAATCCAGCCCCAGCTGGACAGGTTGATTATACCAAGGCTTGGGAAGAGTACTACAAGAAAATGG
Seq C2 exon
GTCAGGCAGTTCCTGCTCCGACTGGGGCTCCTCCAGGTGGTCAGCCAGATTATAGTGCAGCCTGGGCTGAGTATTATAGACAACAAGCAGCCTATTATGCCCAGACAAGTCCCCAGGGAATGCCACAGCATCCTCCAGCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-'33-48,'33-38,35-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=0.654 C2=0.780
Domain overlap (PFAM):
C1:
NO
A:
PF090055=DUF1897=PU(78.6=84.6)
C2:
PF090055=DUF1897=PD(17.9=10.2),PF090055=DUF1897=WD(100=67.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATCCAAATTCAGCAGCT
R:
TAATCTGGCTGACCACCTGGA
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains