DreEX0033762 @ danRer10
Exon Skipping
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8858216-8861910:+
Coord C1 exon
chr2:8858216-8858356
Coord A exon
chr2:8859274-8859333
Coord C2 exon
chr2:8861753-8861910
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTTGGTCTTGTCTCTTCAGGTC
3' ss Score
12.13
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGTTTGTTCCCCAGATAAAGCAGCGGCTGATGCTAATGCTGCAGCATGGGCTGCCTATTATTCTCAGTACCAGCAGCAGCCTCAGGGTCCAATGACACCCACCTCGGCAGCCCCAGGCACAACCCAAGCCAATGGACAAG
Seq A exon
GTCAAGGCCAGCCTCAGCAGGACTACACCAAGGCGTGGGAAGAGTACTATAAGAAGCAAG
Seq C2 exon
GTCAAGCTGCTCCTCAAGCAGCTGCAGCAGCAACGGCAACACAGCCCGGAGGTCAGCCGGATTACAGTGCAGCGTGGGCCGAGTATTACCGCCAACAGGCCGCCTACTATGGTCAAGGAGCCCCTCAGGCAATGGGTGGTGCACCCCAGGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-'16-21,'16-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.958 A=0.905 C2=0.755
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090055=DUF1897=WD(100=62.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCCAAGCCAATGGACAA
R:
TCCTTGACCATAGTAGGCGGC
Band lengths:
141-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]