BtaEX0015097 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100944914-100945908:+
Coord C1 exon
chr11:100944914-100945074
Coord A exon
chr11:100945439-100945571
Coord C2 exon
chr11:100945835-100945908
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTCATTGACTCTGGCTTTAGTTT
3' ss Score
5.33
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GGGGCGAGAACATCAAGAGCATAAACCAGCAGTCGGGAGCACACGTGGAGCTTCAGCGGAACCCCCCTCCCAGCACTGACCCCAACCTGCGGATATTCACCATCCGGGGGCTCCCTCCGCAGATCGAGGTGGCCAGACACCTCATAGATGAGAAAGTCGGC
Seq A exon
TTTCAGGCGCCTCAAAGCAGATAAAGAAAGGGAGTGTTGATGGAGGACAGATGGGCCACTGCTCACCTCAGAGGGGCCGTAGAGTGGCAGAGAGAGCCGTGGGCCGGCCTAAGTTGACGGGAGAGTCCAGCAG
Seq C2 exon
GGGACCAGTATTGGAGCTCCTGGACCCTTTGGACAGAGCCCCTTCAGCCAGCCGCCTGCCGCACCTCATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.639 A=0.857 C2=1.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000017383fB2878
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCGAGAACATCAAGAGCAT
R:
TTTTGATGAGGTGCGGCAGG
Band lengths:
234-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development