RnoEX0037106 @ rn6
Exon Skipping
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10226560-10227539:-
Coord C1 exon
chr3:10227379-10227539
Coord A exon
chr3:10226882-10227014
Coord C2 exon
chr3:10226560-10226633
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTCATTGACTCTGGCTTTAGTTT
3' ss Score
5.33
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GGGGCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCACGTGGAGCTGCAGCGGAACCCCCCTCCTAACACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATCGAGGTGGCCAGGCATCTCATAGATGAGAAAGTTGGC
Seq A exon
TTTCAGGCACCTCAAAGCAGATAAAGAAAGGGAGTGTTGATGGAGGACAGATGGGCCACTGCTCACCTCAATGGGGACGTAGAATGGCAGAAAGAGCCCTGGGCCAGCCTAAATTGACGGGAGAGTCAAGCAG
Seq C2 exon
GGTGCCAGCCTCGGAGCCCCTACAGCCTTCGGACAGAGCCCCTTCAGCCAGCCACCAGCTGCACCACATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000021871fB5751
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCGAGAACATCAAAAGCA
R:
TTTTGATGTGGTGCAGCTGGT
Band lengths:
235-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]