MmuEX0019736 @ mm10
Exon Skipping
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31611579-31612558:+
Coord C1 exon
chr2:31611579-31611739
Coord A exon
chr2:31612103-31612235
Coord C2 exon
chr2:31612485-31612558
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTCATTGACTCTGGCTTTAGTTT
3' ss Score
5.33
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GGGGCGAGAACATCAAAAGCATCAACCAGCAATCAGGTGCCCATGTGGAGCTTCAGCGGAACCCCCCTCCTAACACCGACCCTAACCTGCGGATATTTACCATCAGGGGTGCTCCTCAGCAGATGGAGGTGGCCAGGCATCTCATAGATGAGAAAGTTGGC
Seq A exon
TTTCAGGCACCTCAAAGCAGATAAAGAAAGGGAATGTTGATGGAGGACAGATGGGCCACTGCTCACCTCAATGGGGACGTAGAATGGCAGAAAGAGCCCTGGGCCAGCCTAAATTGACGGGAGAGTCAAGCAG
Seq C2 exon
GGTGCCAGCCTCGGAGCCCCTGCAGCCTTCGGACAGAGCCCCTTCAGCCAGCCACCAGCCGCACCACATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.779 A=0.857 C2=0.974
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCGAGAACATCAAAAGCA
R:
TTTTGATGTGGTGCGGCTGG
Band lengths:
235-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types