BtaEX0016459 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001132 | GTDC1
Description
Bos taurus glycosyltransferase-like domain containing 1 (GTDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076035]
Coordinates
chr2:52664742-52869103:+
Coord C1 exon
chr2:52664742-52664915
Coord A exon
chr2:52825435-52825767
Coord C2 exon
chr2:52868994-52869103
Length
333 bp
Sequences
Splice sites
3' ss Seq
GCATTTTCCTTTTGTAATAGATT
3' ss Score
7.52
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CCTGGTGGCTGATGTGGTGGTATTCAACTCAGTTTTTAATATGGAGTCATTTCTCACTTCTATTGGAAAATTCATGAAGTTGATTCCTGATCACAGACCCAAGGATCTGGAAAGCATCATCAGACCCAAGTGCCAAGTTATTTACTTTCCCATCAGGTTTCCTGACGTGAGCAG
Seq A exon
ATTCATGCCCAAGCACAAAGCAGCCCATTTACAGAAGATACTCAGCCTTAAAGAAAATGGTGGCAATGCTCCATCCACGGCCCTTCCTTTCCAACAGCAGCTGAGAGGTTCTGAGAATTTATTGAAGAGTTTTGATTCAAAGTCTGGACCCTGTGATGCTGCACAACAAGAAAGCCTGGGTTGCTCAGTAAGACAGGCGTCATACTTGAAAACATTCAACTCCTCAGATGATTCAAGCACACATCATGGGGAACATAAACAAAATCGGTGTGACGTTTTGGCTGAAGCTGATGATCAGCAAAGACCATTACATATTGTCTGGCCTCACAGGTG
Seq C2 exon
GGAGCATGATAAAGATCCAGAGAGTTTTTTTAAGGTATTGATGCATCTTAAGGACTTAGGACTCAATTTCCACGTATCTGTCCTTGGAGAAACCTTCACAGATGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001132_MULTIEX2-2/5=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.294 C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PD(30.5=86.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000001505fB3147
Main Skipping Isoform:
ENSBTAT00000001505fB3145
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGCTGATGTGGTGGTAT
R:
GGGACATCTGTGAAGGTTTCTCC
Band lengths:
280-613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development