MmuEX0022055 @ mm9
Exon Skipping
Gene
ENSMUSG00000036890 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2444269]
Coordinates
chr2:44447401-44607740:-
Coord C1 exon
chr2:44607567-44607740
Coord A exon
chr2:44490522-44490836
Coord C2 exon
chr2:44447401-44447510
Length
315 bp
Sequences
Splice sites
3' ss Seq
GCATTCCCTTTTTGTAACAGATT
3' ss Score
8.27
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TTTGGTGGCTGATGTTGTGGTATTCAATTCCAGTTTTAATATGGAATCATTTCTTACTTCTATTGGAAAATTCCTGAAGCTGATTCCTGATCACAGGCCTAAGGATCTGGAAAGCATTATCAGACCCAAGTGTCAAGTTATTTATTTTCCCATCAGATTTCCTGATGTGAGCAG
Seq A exon
ATTCATGCCCAAGCACAAAATAGCCCACTTAAGGAGGATGCTCAGCCTTATTGGAGATGCTGCTGCATCTCAGTCTGTGGCGCCTTGTCCCCAGCCAGGGCAGAGGGTTTCTGAGAAGTCACCGGAGAACTGTGAATCAAAGTCTGATGAACACCCTGACCTTGATGCTGAACAAGAAGCCCTGGACAACCCATCAGTCCATAAATCAGGCTCTCTTCCTGTGAGTAAAGAAAACCTGCCTCTTGATCCCAGCACCCTTCTGTGTGGAGCTGAAGATCCGCAAAGACCGCTGCACATTACATGGCCGCACAGGTG
Seq C2 exon
GGAGCATGACAAAGATCCAGAGACGTTCTTAAAGATACTAATGAGTCTAAAGCAGTTAAACTTGAACTTCCATGTCTCTGTCCTCGGAGAGACTTTTACAGACACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036890-'14-22,'14-21,17-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.528 C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PD(30.5=86.4)
A:
PF120383=DUF3524=PD(31.0=25.5),PF136921=Glyco_trans_1_4=PU(11.9=9.4)
C2:
PF0053415=Glycos_transf_1=FE(24.2=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGTGGCTGATGTTGTGGT
R:
GGTGTGTCTGTAAAAGTCTCTCCG
Band lengths:
282-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: