RnoEX0040389 @ rn6
Exon Skipping
Gene
ENSRNOG00000031038 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:RGD Symbol;Acc:1563393]
Coordinates
chr3:29435484-29590206:-
Coord C1 exon
chr3:29590033-29590206
Coord A exon
chr3:29470963-29471277
Coord C2 exon
chr3:29435484-29435593
Length
315 bp
Sequences
Splice sites
3' ss Seq
GCATTCCCTTTTTGTAACAGATT
3' ss Score
8.27
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TTTGGTGGCTGATGTTGTGGTATTCAATTCCAATTTTAATATGGAATCATTTCTTACTTCTATTGGAAAATTCCTGAAGCTGATTCCTGATCACAGGCCTAAGGATCTGGAAAGCATTATCAGACCCAAGTGTCAAGTAATTTACTTTCCCATCAGATTTCCTGATGTGAGCAG
Seq A exon
ATTCATGCCCAAGCACAAAATAGCCCACTTAAGGAGGATGCTCAGCCTTATTGGAAATGATGCTGCAGCGCTGTCTGTGACGCTTCCTCCCCAACCAGAGCAGAGGCTTTCTAAGAAGTCACTGGAGAATTTTGAATCAAAGTCTGATGAACACCCTGGCCTTGATACTGAACAAGAAACCCTGGACACCCCAACAATCCTCAAATCAGTCTCCCTTCCTGTGAGCGAAGAAAACCCGGCTCTTGGTCACAGCACCTTTTTGTGTGGAGCTGAAGATCAGCAGAGACCGCTGCACATTACATGGCCGCACAGGTG
Seq C2 exon
GGAGCATGACAAAGATCCAGAGACGTTTTTAAAGGTCTTAATGCATCTAAAAGAGTTAAGGCTCAATTTCTACGTCTCTGTCCTTGGAGAGACTTTTACAGATGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031038_MULTIEX2-14/15=8-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.329 C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PD(3.2=3.4),PF120383=DUF3524=PD(96.2=86.4)
A:
PF0053415=Glycos_transf_1=PU(7.8=11.3)
C2:
PF0053415=Glycos_transf_1=FE(24.2=100)
Main Skipping Isoform:
ENSRNOT00000059679fB6302
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGTGGCTGATGTTGTGGT
R:
ACATCTGTAAAAGTCTCTCCAAGGAC
Band lengths:
279-594
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]