BtaEX0017054 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013065 | HFE
Description
Bos taurus hemochromatosis (HFE), mRNA. [Source:RefSeq mRNA;Acc:NM_001012399]
Coordinates
chr23:31617685-31620050:+
Coord C1 exon
chr23:31617685-31617948
Coord A exon
chr23:31618378-31618677
Coord C2 exon
chr23:31619775-31620050
Length
300 bp
Sequences
Splice sites
3' ss Seq
ACCTGCTCCTTTGGTTTCAGTAA
3' ss Score
7.71
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GGTCACACTCCCTGCGCTTCCTCTTCATGGGCGCCTCCAAACCAGACCTCGGGCTGCCCCTGTTTGAGGCTTTGGGCTACGTGGATGACCAGCTGTTCGTGTCCTATGATCATGAGAGTCGCCGTGCAGAGCGGCGCGCCCCATGGCTCTGGGGCAGGGCCACCAGCCAGCTGTGGCTGCAGCTGAGTCAGAATCTGAAAGGCTGGGACCACATGTTCATCGTGGACTTCTGGACGATCATGGACAACCACAACCAAAGCAAGG
Seq A exon
TAACGAAGCTGGGGGCGTTGCCAGAGTCCCACACCCTGCAGGTGATCCTGGGCTGTGAGTTGCAAGAGGACAACAGCACCAGAGGGTTCTGGAAGTACGGGTACGATGGGCAGGACCATCTTGAATTCCGGCCTGAGACACTGGATTGGAGAGCAGCAGAGCCCAGGGCCCAAGTCACCAAGCTGGAGTGGGAAGTGAACAAGATTCGGGCCAAGCAGAACAGGGCCTACCTGGATCGGGATTGCCCCGAGCAGCTGCTGCATTTGCTGGAGCTGGGGAGAGGGCCTCTGGAGCAGCAAG
Seq C2 exon
TGCCTCCTTTGGTGAAAGTGACTCATCACGTGACCTCTTCACTGACTACTCTTCGGTGTCGGGCTCTGAACTTCTACCCCCAGAACATCACCATTAGGTGGCTGAAGGACAAGCAGTTCCTGGATGCCAAGGAGATTAAGCCAGAGGATGTGTTGCCCAATGGGGACGGGACCTACCAGGCCTGGGTGGCCTTGGCCATGCTCCCTGGGGAAGAGCAGAGATACAGCTGCCAAGTGGAGCACCCAGGCCTGGATCAGCCCCTCACTGCCACCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013065-'2-5,'2-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(47.6=98.9)
A:
PF0012913=MHC_I=PD(51.9=95.0)
C2:
PF0765410=C1-set=WD(100=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGGCTACGTGGATGACC
R:
ATTGGGCAACACATCCTCTGG
Band lengths:
356-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development