RnoEX0041768 @ rn6
Exon Skipping
Gene
ENSRNOG00000016967 | Hfe
Description
homeostatic iron regulator [Source:RGD Symbol;Acc:2793]
Coordinates
chr17:43661276-43667203:+
Coord C1 exon
chr17:43661276-43661446
Coord A exon
chr17:43665690-43665989
Coord C2 exon
chr17:43666928-43667203
Length
300 bp
Sequences
Splice sites
3' ss Seq
ACCAACATTTTCATTTCCAGTCA
3' ss Score
8.29
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
TCAGCAATGGCTACAGGGTGACTTCTTGGATCCTCCACGTTTCCAGGTCCTAGTGAAAACCGGTGGACCCAGCTGGAGGCATGGACCGATCAGCTGGGCTCCCTGTGCGGCTGCTATTGCTGCTGCTGTTGTTGCTGCTGTGGTCCGTGGCCCCGCAGGCGCTGCGGCCCG
Seq A exon
TCACGAAGTTGAGAGTGGTGCCTGAGTCTCACATCCTGCAGGTGATCCTAGGATGTGAGGTGCATGAAGACAACAGTACCAGTGGCTTCTGGAAATATGGCTACGATGGGCAAGATCACCTTGAATTCTGCCCCAAGACACTGAACTGGAGTGCAGCCGAGCCAAGGGCCTGGGCCACCAAGATGGAGTGGGAAGAGCACAGGATCCGTGCCAGACAGAGCAGGGACTACCTGCAGAGGGACTGCCCCCAGCAGCTGAAGCAGGTCCTGGAGCTCCAGAGAGGGGTTCTGGGACAGCAAG
Seq C2 exon
TGCCTACTTTGGTGAAAGTGACTCGCCACTGGGCCTCTACAGGGACCTCTCTAAGGTGTCAGGCTCTGAATTTCTTCCCCCAGAACATCACTATGAGGTGGTTGAAGGACAGCCAGCCCCTAGATGCCAAGGATGTCAACCCTGAGAACGTGCTGCCAAATGGGGATGGGACCTATCAGGGCTGGCTGACCTTGGCTGTGGCCCCTGGAGAAGAGACAAGGTTCAGCTGTCAAGTGGAGCACCCAGGCCTGGATCAGCCTCTCACTGCCACTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016967_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.099
Domain overlap (PFAM):
C1:
NO
A:
PF0012913=MHC_I=PD(51.9=95.0)
C2:
PF0765410=C1-set=WD(100=88.2)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGAAAACCGGTGGACCCA
R:
ACCTTGTCTCTTCTCCAGGGG
Band lengths:
343-643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]