MmuEX6057562 @ mm10
Exon Skipping
Gene
ENSMUSG00000006611 | Hfe
Description
hemochromatosis [Source:MGI Symbol;Acc:MGI:109191]
Coordinates
chr13:23705861-23708291:-
Coord C1 exon
chr13:23708028-23708291
Coord A exon
chr13:23706767-23707066
Coord C2 exon
chr13:23705861-23706136
Length
300 bp
Sequences
Splice sites
3' ss Seq
ACCAACCTTTTTATTTCCAGTCA
3' ss Score
7.71
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTCACATTCTCTAAGATACCTCTTCATGGGTGCCTCAGAGCCAGACCTCGGGCTGCCTTTGTTTGAGGCTAGGGGCTATGTGGATGACCAGCTCTTTGTGTCCTACAATCATGAGAGTCGCCGTGCTGAGCCCAGGGCCCCGTGGATCTTGGAGCAAACCTCAAGCCAGCTGTGGCTGCATCTGAGTCAGAGCCTGAAAGGGTGGGACTACATGTTCATAGTAGACTTCTGGACCATCATGGGCAACTATAACCACAGTAAGG
Seq A exon
TCACGAAGTTGGGAGTGGTGTCCGAGTCCCACATCCTGCAGGTGGTCCTAGGCTGTGAGGTGCATGAAGACAACAGTACCAGCGGCTTCTGGAGATATGGTTATGACGGGCAAGATCACCTGGAATTCTGCCCCAAGACACTAAACTGGAGCGCAGCCGAGCCAGGGGCCTGGGCCACCAAGGTGGAATGGGACGAGCACAAGATCCGTGCCAAACAGAACAGGGACTACCTGGAGAAGGACTGCCCCGAGCAGCTGAAACGGCTCCTGGAGCTGGGGAGAGGCGTTCTGGGACAGCAAG
Seq C2 exon
TGCCTACTTTGGTGAAAGTGACTCGCCACTGGGCCTCTACGGGGACCTCTCTAAGGTGTCAGGCTCTGGACTTCTTCCCCCAGAACATCACTATGAGGTGGTTGAAGGACAACCAACCACTGGATGCCAAAGATGTCAACCCCGAGAAGGTGCTACCTAACGGGGATGAGACCTATCAAGGCTGGCTGACATTGGCCGTGGCCCCTGGGGACGAGACAAGGTTCACCTGTCAAGTGGAGCACCCAGGCCTGGACCAGCCTCTCACTGCCTCTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006611-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(47.6=98.9)
A:
PF0012913=MHC_I=PD(51.9=95.0)
C2:
PF0765410=C1-set=WD(100=88.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGCAAACCTCAAGCCAG
R:
GCTCCACTTGACAGGTGAACC
Band lengths:
355-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types