Special

BtaEX0017069 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus HGF activator (HGFAC), mRNA. [Source:RefSeq mRNA;Acc:NM_001207029]
Coordinates
chr6:107267258-107268060:+
Coord C1 exon
chr6:107267258-107267397
Coord A exon
chr6:107267682-107267822
Coord C2 exon
chr6:107267912-107268060
Length
141 bp
Sequences
Splice sites
3' ss Seq
CCGACCTCTCTCCTGCCCAGTCC
3' ss Score
7.19
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CCCCCCCAGGGAAAGCGTCTCCGTGGTCTTGGGCCAGCACTTCTTCAACCGCACGACGGACGTGACACAGACGTTTGGCATCGAGAAGTACATCCCGTACCCGCTGTACTCGGTGTTCAACCCCAGTGACCACGACCTCG
Seq A exon
TCCTGATCCGGCTGGAGAAGAAAGGGGAGCGCTGCGCCGTCCGCTCCCAGTTCGTCCAGCCCATCTGTCTGCCCGAGCCTGGCAGCTCCTTCCCCCCGGGACACAAGTGCCAGATAGCAGGCTGGGGCCACCAGGATGAGA
Seq C2 exon
ACGTGAGCGGCTACTCCCCCTCGCTGCGGGAGGCGTTGGTGCCATTGGTCGCAGACCACAAGTGCAGCAGCCCTGAGGTGTATGGGGCCGACATCAGCCCGAACATGCTGTGTGCCGGCTACTTCGACTGCAGGTCGGACGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017335-'2-8,'2-7,3-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=FE(20.1=100)
A:
PF0008921=Trypsin=FE(20.1=100)
C2:
PF0008921=Trypsin=FE(20.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGCCAGCACTTCTTCAA
R:
GACCTGCAGTCGAAGTAGCC
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development