GgaEX6036059 @ galGal3
Exon Skipping
Gene
ENSGALG00000015623 | E1BZN8_CHICK
Description
NA
Coordinates
chr4:84947577-84951827:-
Coord C1 exon
chr4:84951688-84951827
Coord A exon
chr4:84949435-84949575
Coord C2 exon
chr4:84947577-84947725
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTGTATTCTCTATTCTGCAGCCT
3' ss Score
8.25
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TCCTCATAAATCCTCTATTAAAGTTGTTCTTGGTCAGCACTTCTTTAATAGAACGACTGATGTAACGCAAACATTTGAAATAGAGAAATACATCTTATATCCTCAGTATTCAGTGTTCAGCCCTACTGAACATGATATTG
Seq A exon
CCTTGATTAAGCTGAAGAAGAATGGCCAACGTTGTGCCGTCAAATCCCAGTTTGTTCAGCCCATCTGCCTGCCAGAAACTAACACAGTTTTCCCCGATGAGTTCAAATGTCAGATTTCTGGATGGGGACACAAACACGAGA
Seq C2 exon
ATATAACTGGATACTCAGATGTACTGCAAGAAACATTGATTCCACTTATTCCTGAGGAAAAGTGCAGAAGCCCTGAAATTTATGGAACAGAAATCAGTGAAAATATGTTCTGTGCTGGCTACTTTGACAGCAAATCTGATGCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.1=100)
A:
PF0008921=Trypsin=FE(20.1=100)
C2:
PF0008921=Trypsin=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTTCTTGGTCAGCACTTCT
R:
GCTGTCAAAGTAGCCAGCACA
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]