Special

GgaEX6036059 @ galGal4

Exon Skipping

Gene
Description
HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
Coordinates
chr4:81497828-81502078:-
Coord C1 exon
chr4:81501939-81502078
Coord A exon
chr4:81499686-81499826
Coord C2 exon
chr4:81497828-81497976
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTGTATTCTCTATTCTGCAGCCT
3' ss Score
8.25
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TCCTCATAAATCCTCTATTAAAGTTGTTCTTGGTCAGCACTTCTTTAATAGAACGACTGATGTAACGCAAACATTTGAAATAGAGAAATACATCTTATATCCTCAGTATTCAGTGTTCAGCCCTACTGAACATGATATTG
Seq A exon
CCTTGATTAAGCTGAAGAAGAATGGCCAACGTTGTGCCGTCAAATCCCAGTTTGTTCAGCCCATCTGCCTGCCAGAAACTAACACAGTTTTCCCCGATGAGTTCAAATGTCAGATTTCTGGATGGGGACACAAACACGAGA
Seq C2 exon
ATATAACTGGATACTCAGATGTACTGCAAGAAACATTGATTCCACTTATTCCTGAGGAAAAGTGCAGAAGCCCTGAAATTTATGGAACAGAAATCAGTGAAAATATGTTCTGTGCTGGCTACTTTGACAGCAAATCTGATGCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623-'10-19,'10-18,12-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=FE(20.1=100)
A:
PF0008921=Trypsin=FE(20.1=100)
C2:
PF0008921=Trypsin=FE(20.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTTCTTGGTCAGCACTTCT
R:
GCTGTCAAAGTAGCCAGCACA
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]