Special

MmuEX6017188 @ mm10

Exon Skipping

Gene
Description
hepatocyte growth factor activator [Source:MGI Symbol;Acc:MGI:1859281]
Coordinates
chr5:35046489-35047264:+
Coord C1 exon
chr5:35046489-35046628
Coord A exon
chr5:35046884-35047024
Coord C2 exon
chr5:35047116-35047264
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTCTCTCCCTCCCAGTCT
3' ss Score
10.39
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCCCCCCAGGGACAGCATCACAGTGGTACTGGGTCAGCACTTCTTCAACCGCACCACGGATGTGACACAGACATTTGGCATTGAGAAGTATGTGCCCTACACCCTGTACTCGGTGTTCAACCCCAACAACCATGACCTTG
Seq A exon
TCTTGATCCGGCTAAAGAAGAAGGGAGAGCGCTGTGCTGTCCGCTCCCAGTTTGTTCAACCCATCTGCCTGCCTGAGGCAGGCAGCTCCTTCCCTACTGGACACAAGTGTCAGATTGCAGGCTGGGGCCACATGGATGAAA
Seq C2 exon
ATGTGAGCAGCTACTCCAACTCCCTGCTGGAGGCACTGGTCCCTCTTGTTGCTGACCACAAGTGTAGCAGCCCAGAGGTATATGGTGCTGACATCAGCCCTAACATGCTCTGTGCCGGCTACTTCGACTGCAAGTCCGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029102-'18-28,'18-25,21-28=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=FE(20.1=100)
A:
PF0008921=Trypsin=FE(20.1=100)
C2:
PF0008921=Trypsin=FE(20.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTACTGGGTCAGCACTT
R:
GACTTGCAGTCGAAGTAGCCG
Band lengths:
255-396
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types