BtaEX0017236 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100700098-100703293:+
Coord C1 exon
chr11:100700098-100700267
Coord A exon
chr11:100702590-100702744
Coord C2 exon
chr11:100703197-100703293
Length
155 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCTCCTCTGCCCAGAGC
3' ss Score
8.68
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGGCTGCAGAATGGCCACCCGGCCGAGGAGCTGCCTGGGGTCCACGTGACCTCGGAGGGGACCACTCTGCACATCGACCACGTGGAGCTGGGCCATGCGGGTCTCTTTGCTTGCCAGGCCACCAACGAGGCTGGCACGGCCGCAGCCGAGGTGGAGCTGTCTGTGCACG
Seq A exon
AGCTCCCATCGGTGGTCATAGTTGGGGGTGAGAACATCACAGCCCCTTTCCTGCAGCCTGTGACCCTCCGATGTGCAGGGACTGGGGTGCCTACCCCAAGCCTCCGCTGGTGGAAGGATGGGGTGGCTCTGGCAGCCTCAGGGGGGAGCCTGCAG
Seq C2 exon
ATCGAGAAGGTGGACCTGAAGGACGAAGGCACCTACACTTGTGTCGCCACTAACCTGGCCGGGGAGAGCAGGAAGGAAGTGATACTCAGGGTGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=0.186 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(64.0=93.2)
A:
NO
C2:
PF0767911=I-set=WD(100=77.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAATGGCCACCCG
R:
TCACTTCCTTCCTGCTCTCCC
Band lengths:
248-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development