HsaEX6063508 @ hg38
Exon Skipping
Gene
ENSG00000148357 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr9:130356088-130358486:+
Coord C1 exon
chr9:130356088-130356257
Coord A exon
chr9:130357834-130357988
Coord C2 exon
chr9:130358390-130358486
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTGACTCTTTCCCTTCCCAGAGT
3' ss Score
10.22
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGGCTGCAGAATGGCCGCCCAGCCGAGGAGCTGGCTGGGGTGCAGGTGGCCTCGCAGGGGACCACACTGCACATTGACCATGTGGAGCTGGACCACTCAGGCCTCTTCGCCTGCCAGGCCACCAATGAGGCGGGCACTGCCGGGGCCGAGGTGGAGGTGTCTGTGCATG
Seq A exon
AGTTCCCATCGGTCAGTATCATTGGGGGTGAGAACATCACAGCTCCTTTCCTGCAGCCTGTGACCCTCCAGTGCATAGGGGATGGGGTGCCCACCCCAAGCCTCCGTTGGTGGAAGGATGGTGTAGCCCTGGCAGCCTTTGGGGGGAACCTACAG
Seq C2 exon
ATTGAGAAGGTGGACCTGAGGGACGAGGGCATCTACACTTGTGCTGCTACCAACCTGGCTGGGGAGAGCAAGAGGGAAGTGGCGCTGAAAGTTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148357-'46-45,'46-44,47-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(64.0=94.8)
A:
PF0767911=I-set=PU(58.4=86.5)
C2:
PF0767911=I-set=PD(39.0=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCTGGCTGGGGTG
R:
CCAAAACTTTCAGCGCCACTT
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains