MmuEX7033491 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31389255-31391526:+
Coord C1 exon
chr2:31389255-31389449
Coord A exon
chr2:31390940-31391117
Coord C2 exon
chr2:31391415-31391526
Length
178 bp
Sequences
Splice sites
3' ss Seq
TCTCAATCTCTCCTGTGCAGAGC
3' ss Score
8.69
5' ss Seq
CTGGCTGTA
5' ss Score
-15.14
Exon sequences
Seq C1 exon
ATGGTTACAGAATGGTCGCCCAGCAGAGGAGCTGGCTGGGGTGCAGCTGGCCTCACAGGGGACCATACTGCACATCAGCCACGTGGAGCTGAACCACTCAGGCCTCTTTGCCTGCCAGGCCACCAACGAGGCAGGAACAGCTGGGGCTGAGGTGGAGGTCTCTGTGCATGGTAAGCAGGTATCTGTGAATCTGGG
Seq A exon
AGCTTCCTTCAGTGCACATCATTGGTGGGGAGAACCTCACAGCCCCTTTCCTGCAACCTGTAACCCTCCAGTGTGTAGGCATTGGAGTGCCTACCCCAAGCCTTCGCTGGTGGAAAGATGGCGTGGCCGTGGCAACCTCAGGGGGCAACCTTCAGGTACAGTTAGGGAACCAGGACTG
Seq C2 exon
ACCCTTCTCTCCCAGATTGAGAAGGCAGACCTGAGAGATGAAGGTGTCTACACGTGTTCAGCCACCAACCTGGCAGGGGAGAGCAAGAAGGATGTAACACTAAAGGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'34-55,'34-44,45-55=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.317 C2=0.026
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(64.0=83.3)
A:
PF0767911=I-set=PU(27.5=23.3)
C2:
PF0767911=I-set=PD(68.6=92.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACAGAATGGTCGCCCAG
R:
GGCTGAACACGTGTAGACACC
Band lengths:
256-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types