BtaEX0018499 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012897 | ITGA7
Description
integrin, alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr5:57895647-57898519:+
Coord C1 exon
chr5:57895647-57895745
Coord A exon
chr5:57895844-57895969
Coord C2 exon
chr5:57897957-57898519
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTCGCCCCTCCCTCCCCAGATC
3' ss Score
13.15
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGTACTCAGCTGTGAAGTCTCTGGAAGTGATTGTTCGAGCCAACATCACTGTGAAATCCTCCATCAAGAACTTGCTGCTCAGAGATGCTTCCACGGTG
Seq A exon
ATCCCGGTGATGGTGTACCTGGACCCCGCGGCTGTGGCAGCAGAAGGAGTCCCCTGGTGGGTCATCCTGTTGGCTGTACTAGCCGGGCTGCTGGTATTGGCGCTGCTGGTGCTGCTCATGTGGAAG
Seq C2 exon
ATGGGATTCTTCAAGCGAGCGCGGTACCCCGAAGCCACCGTACCCCAGTACCATGCGGTGAAGATCCCGCGGGAAGACCGGCAGCAGTTCAAGGAGGAGAAGACGGGTACCATCCTGAGGAACAACTGGGGCAGCCCCCGGCGGGAGGGCCCAGATGCCCACCCTATCTTGGCTGGGGATGGGCACCCAGAGCTGGGCTCTGATGGGCACACAGTGCCAGGCACAGCTTAGCCTTCTCCACCTGGCCTGGCCCATAGGCCCCTTGCACCCCTTCCCCAGATATGGCTCCTGGGGATGACGAGGGTAGAATGGGTTACTGGTGTCCCATCCAGATTTGGCAGGATCTCTTTCCTCTGGGGCACAGATCTCTGTCCCCCATGAGGACCACCCCCCTGCCAAACTTCCCCTTATGATGCTGTGAGATGAAAGGGGGTAAATCAGGGATGGGTCGTGGGGGAGGGTGAGAAGGGCAGCGGTGTCCTGATTCAAAAGTGGGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012897-'50-52,'50-50,51-52
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.594
Domain overlap (PFAM):
C1:
NO
A:
PF0035715=Integrin_alpha=PU(0.1=0.0)
C2:
PF0035715=Integrin_alpha=PD(86.7=16.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGAGCCAACATCACTGT
R:
CATCCCCAGCCAAGATAGGGT
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development