RnoEX6030297 @ rn6
Exon Skipping
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3379091-3384675:+
Coord C1 exon
chr7:3379091-3379189
Coord A exon
chr7:3379278-3379403
Coord C2 exon
chr7:3383220-3384675
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGAGCTTCTTGTTTCTCAGATC
3' ss Score
8.58
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGTACATGTCCGTGAAGTCCCTGGAGGTGATCGTCCGAGCCAACATCACAGTGAAATCCTCCATTAAGAACTTGCTGCTCAGAGATGCATCCACAGTG
Seq A exon
ATCCCAGTGATGGTATACTTGGACCCGGTGGCTGTGGTTGCAGAAGGAGTCCCCTGGTGGGTCATCCTCCTGGCGGTGCTGGCTGGGCTGCTAGTACTGGCCCTGCTGGTGCTGCTGCTGTGGAAG
Seq C2 exon
CTGGGATTCTTCAAGCGGGCGAAGCACCCTGAGGCCACTGTACCCCAGTACCACGCAGTGAAGATCCTTCGGGAAGACCGGCAGCAGTTCAAGGAGGAGAAGACAGGCACCATTCAGAGGAGTAACTGGGGCAATTCCCAGTGGGAGGGCTCCGACGCACACCCTATCCTGGCTGCCGACTGGCACCCTGAGTTGGGTCCTGATGGACATCCTGTGTCAGTCACTGCCTAACTTCTCCTGTCCCAAGCCCAGCCTCTGGGTTCCTTCCACCCTTTCCCAAGATGGCTCTTTGGGGGTGGAGATAGTGGAGTAGGTTGCTGGCTTCATGTTGAAATAAGGCAGGTTCTGCTTTCTCAGGGGCACAGATCTTTCCCACCGTGAGAACCACCCCTTCCCATCTTCTCCGTACAATGCTGTGAGACACGGGGCATGGCTGGAAGGACAGGCATGACCTGGTGCAGGATGGAGAAGAAGGGGTACTGAGCTGCCTCTCTCACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905-'35-43,'35-37,36-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
PF0035715=Integrin_alpha=PU(0.1=0.0)
C2:
PF0035715=Integrin_alpha=PD(86.7=16.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCCAACATCACAGTGAA
R:
AGTCGGCAGCCAGGATAGG
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]