MmuEX0024623 @ mm10
Exon Skipping
Gene
ENSMUSG00000025348 | Itga7
Description
integrin alpha 7 [Source:MGI Symbol;Acc:MGI:102700]
Coordinates
chr10:128953760-128958282:+
Coord C1 exon
chr10:128953760-128953858
Coord A exon
chr10:128953946-128954071
Coord C2 exon
chr10:128957621-128958282
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGAGCTTCTTGTTTCTCAGATT
3' ss Score
8.19
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGTACATGGCCGTGAAATCCCTGGAAGTGATCGTCCGAGCCAACATCACAGTGAAATCCTCCATTAAGAACTTGTTGCTCAGAGATGCATCCACAGTG
Seq A exon
ATTCCAGTGATGGTGTACTTGGACCCCATGGCCGTGGTTGTGGAAGGAGTCCCCTGGTGGGTCATCCTCCTGGCAGTGCTGGCTGGGCTGTTAGTCCTGGCCTTGCTGGTACTGCTGCTGTGGAAG
Seq C2 exon
CTGGGATTCTTCAAGCGGGCGAAGCACCCCGAGGCCACCGTGCCCCAGTACCACGCAGTGAAGATCCCTCGGGAAGACCGACAGCAGTTCAAGGAGGAGAAGACAGGCACCATCCAGAGGAGTAACTGGGGCAACTCCCAGTGGGAGGGCTCCGACGCACACCCCATCTTGGCTGCCGACTGGCATCCTGAGCTGGGTCCTGATGGACATCCGGTGCCAGCCACTGCCTAACATCTGCTGTCCCAAGCCCAGCCCGTGGGTTCCTTCCGCCCTTTTCCCAAGATGGCTCCTTGGGATGGAGATAGTGGAGTAAGTTGCTAGCATCACGTTGAGATATGGCAGGCTCTGCTTTCTCAGGAGCACAGATCTTTCTCCCACCAGGAGAACCACCCCTCCATCTTCCCCATACAATGCTGTGAGACGAGGGGGCATGGCTGGAAGGGCAGGCATGTCCTGATACAGGGTGGGGAGAAGGGGTTCTGAGCTCCCTCTCACCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025348_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.321
Domain overlap (PFAM):
C1:
NO
A:
PF0035715=Integrin_alpha=PU(0.1=0.0)
C2:
PF0035715=Integrin_alpha=PD(86.7=16.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCCAACATCACAGTGAA
R:
CAGTCGGCAGCCAAGATGG
Band lengths:
246-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types