BtaEX0018913 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93656526-93658204:-
Coord C1 exon
chr4:93658093-93658204
Coord A exon
chr4:93657900-93658001
Coord C2 exon
chr4:93656526-93656690
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTCCCACGTCCCTTCTCCAGGTG
3' ss Score
11.65
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
CGTGCACGTGACCAACGATGACCGGGGCCGGAGCGGCGTGTCCTGGACCCAGGAAGTGGCTGTGCTGCTGGGAGACGTGGCCGTGCGGCTGCTGCAGGACAGGGCGGTCACG
Seq A exon
GTGGACGGGCGCCCTGTGGCCTTGCCCTTCCTGCAGGAACCGCTGTTCTATGTAGAGCTTCGGGGACGCACGGTGGTGCTGCACTCCCAGCCAGGGCTCCAG
Seq C2 exon
GTGCTGTGGGATGGGCGGTCCCAGGTGGAGGTGAGAGTGCCTGGCTCCTACCGGGGCCACATGTGTGGGCTCTGCGGCAACTTCAATGGCTTTGCCCAGGATGACCTGCGGGACCCTGAGGAACTGCTCCGGTCCACTGAGGCTGCATTTGGGAATAGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449_MULTIEX1-23/25=22-25
Average complexity
C1
Mappability confidence:
96%=96=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(24.7=100)
A:
PF0009420=VWD=FE(22.0=100)
C2:
PF0009420=VWD=PD(27.3=74.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCAACGATGACCGGG
R:
CAAATGCAGCCTCAGTGGACC
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development