DreEX0005344 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6947125-6949503:-
Coord C1 exon
chr18:6949392-6949503
Coord A exon
chr18:6949032-6949133
Coord C2 exon
chr18:6947125-6947289
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAATGATTTTAATCCCTCAGGTT
3' ss Score
7.3
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
TGTCCATGTGTCCAATGAGGACCGGGGACGTAAAGGAGTGTCTTGGACTAAAGAGGTGACCGTGTTTATTGGAGATGTTGTGATACAGCTTTATCAGGACTGGATTGTCAAG
Seq A exon
GTTGATTATGAGCCAGTCTCCCTGCCGTATCTTAAAGAGCCTTATATTTATCTAGAGCGCAAGACCAACACCATCCTCCTGAACACCAATGTTGGGCTAAAG
Seq C2 exon
GTGTTGTGGAATGGTCGTTCTCATCTGGAAGTCAGTGTTCCCGGCACCTACAAGAACCACATGTGCGGGTTATGTGGCAACTTCAACAATTACCCTCAGGATGATATGAAACTGCGCAATGGACAAATTGCCACCTCTGAAGCAGCATTTGGAAACAGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'50-49,'50-48,51-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(25.2=96.3)
A:
PF0009420=VWD=FE(22.0=100)
C2:
PF0009420=VWD=PD(27.3=74.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGTAAAGGAGTGTCTTGG
R:
CCAGCTGTTTCCAAATGCTGC
Band lengths:
250-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]