HsaEX7004439 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128878558-128879829:-
Coord C1 exon
chr7:128879718-128879829
Coord A exon
chr7:128879522-128879623
Coord C2 exon
chr7:128878558-128878722
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCACCTCCTTTATCCTCCAGGTG
3' ss Score
11.97
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
TGTGCACGTGACCAATGATGACCGGGGCCGGAGCGGTGTGGCCTGGACCCAGGAGGTGGCGGTGCTGCTGGGAGACATGGCCGTGCGGCTGCTGCAGGACGGGGCAGTCACG
Seq A exon
GTGGATGGGCACCCGGTGGCCTTGCCCTTCCTGCAGGAGCCGCTGCTGTATGTGGAGCTGCGAGGACACACTGTGATCCTGCACGCCCAGCCCGGGCTCCAG
Seq C2 exon
GTGCTGTGGGATGGGCAGTCCCAGGTGGAGGTGAGCGTACCTGGCTCCTACCAGGGCCGGACTTGTGGGCTCTGTGGGAACTTCAATGGCTTTGCCCAGGACGATCTGCAGGGCCCTGAGGGGCTGCTCCTGCCCTCGGAGGCTGCGTTTGGGAATAGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-'52-64,'52-61,53-64=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(24.7=100)
A:
PF0009420=VWD=PD(33.9=73.1)
C2:
PF0009420=VWD=PD(27.3=74.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGATGACCGGGGCCG
R:
CTATTCCCAAACGCAGCCTCC
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains