BtaEX0018974 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002328 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr17:55947223-55953078:+
Coord C1 exon
chr17:55947223-55947338
Coord A exon
chr17:55950728-55950779
Coord C2 exon
chr17:55952952-55953078
Length
52 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTTTAATGTTCCCAGGCA
3' ss Score
6.97
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GCTGGATCCATGCAGTCTACACTCCCGTAGACTCTCTGGTGTTCGGCGGGAACATCCTGCACAGCTTCAACGTGCCCATGCAGCTGCGGATCTACGAGATCGAGGACAGAACGCGG
Seq A exon
GCATGTGGCTGAAACCTTTTGAAGGCGAAGGGTGGAAGGCGACAACCTGTTT
Seq C2 exon
GTGCAGCCCAAATTCCGTTACCCCTTCTACTATGAGATGTGCTGGTATGTCTTGGAGAGATACGTGTACTGTATGACCCAGCGGTCCTACCTCACTCAGGAATACCAGAGAGAATCAATGCTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002328_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=PD(12.1=66.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000003003fB3584
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCACAGCTTCAACGTG
R:
ACCGCTGGGTCATACAGTACA
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development